3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07734

Details:

PFam ID : PF07734

PFam Domain Description : F-box associated

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 590

Average sequence length: 145.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07734	A4H3Q7_LEIBR_34_110	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07734	A2XHD1_ORYSI_82_184	99.6

Sequence based PCA Plot of the family - PF07734 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=145 Length=8
Motif3 Start=169 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay