3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07733

Details:

PFam ID : PF07733

PFam Domain Description : Bacterial DNA polymerase III alpha subunit

Number of Sequence in 50% Dataset : 133

Number of Sequence in Full Dataset : 1814

Average sequence length: 406.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07733	A4H3Q7_LEIBR_34_110	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07733	B3R0M5_PHYMT_825_1264	99.9

Sequence based PCA Plot of the family - PF07733 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=9 Length=8
Motif3 Start=19 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay