3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07730

Details:

PFam ID : PF07730

PFam Domain Description : Histidine kinase

Number of Sequence in 50% Dataset : 559

Number of Sequence in Full Dataset : 3920

Average sequence length: 67.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07730	C0AYB9_9ENTR_253_293	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07730	Q1YTG6_9GAMM_348_447	99.9

Sequence based PCA Plot of the family - PF07730 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=54 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay