3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07728

Details:

PFam ID : PF07728

PFam Domain Description : AAA domain (dynein-related subfamily)

Number of Sequence in 50% Dataset : 345

Number of Sequence in Full Dataset : 3311

Average sequence length: 132.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07728	C5LCI1_9ALVE_297_342	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07728	C9SUW5_VERA1_2139_2208	99.8

Sequence based PCA Plot of the family - PF07728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=20
Motif2 Start=166 Length=8
Motif3 Start=182 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay