3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07726

Details:

PFam ID : PF07726

PFam Domain Description : ATPase family associated with various cellular activities (AAA)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 1209

Average sequence length: 130.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07726	A5C7N9_VITVI_620_639	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07726	Q648N8_9ARCH_57_200	100

Sequence based PCA Plot of the family - PF07726 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=113 Length=32
Motif2 Start=79 Length=29
Motif3 Start=33 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay