3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07725

Details:

PFam ID : PF07725

PFam Domain Description : Leucine Rich Repeat

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 264

Average sequence length: 19.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07725	A5C7N9_VITVI_620_639	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07725	D1GEB0_BRARP_600_619	100

Sequence based PCA Plot of the family - PF07725 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay