3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07724

Details:

PFam ID : PF07724

PFam Domain Description : AAA domain (Cdc48 subfamily)

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 3621

Average sequence length: 168.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07724	B5S3A2_RALSO_113_159	65.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07724	Q661Q0_BORGA_498_658	99.9

Sequence based PCA Plot of the family - PF07724 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=11
Motif2 Start=10 Length=8
Motif3 Start=49 Length=20
Motif4 Start=185 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay