3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07723

Details:

PFam ID : PF07723

PFam Domain Description : Leucine Rich Repeat

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 229

Average sequence length: 25.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07723	D7LW95_ARALL_111_137	34.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07723	FDL10_ARATH_175_200	96.9

Sequence based PCA Plot of the family - PF07723 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay