3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07721

Details:

PFam ID : PF07721

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 270

Number of Sequence in Full Dataset : 312

Average sequence length: 24.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07721	Y1348_METJA_16_52	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07721	Q0JZ82_CUPNH_1090_1115	9

Sequence based PCA Plot of the family - PF07721 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay