3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07720

Details:

PFam ID : PF07720

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 105

Average sequence length: 32.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07720	Y1348_METJA_16_52	35.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07720	E8ITQ9_ECOLX_32_65	52

Sequence based PCA Plot of the family - PF07720 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay