3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07718

Details:

PFam ID : PF07718

PFam Domain Description : Coatamer beta C-terminal region

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 149

Average sequence length: 233.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07718	E1EZM8_GIAIA_761_1045	74.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07718	Q4GYW5_9TRYP_690_976	100

Sequence based PCA Plot of the family - PF07718 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=268 Length=8
Motif2 Start=157 Length=8
Motif3 Start=2 Length=11
Motif4 Start=176 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay