3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07717

Details:

PFam ID : PF07717

PFam Domain Description : Oligonucleotide/oligosaccharide-binding (OB)-fold

Number of Sequence in 50% Dataset : 330

Number of Sequence in Full Dataset : 1678

Average sequence length: 131.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07717	C5K645_9ALVE_1_49	90.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07717	A4QV67_MAGO7_1140_1340	100

Sequence based PCA Plot of the family - PF07717 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=181 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay