3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07716

Details:

PFam ID : PF07716

PFam Domain Description : Basic region leucine zipper

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 616

Average sequence length: 53.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07716	O85968_SPHAR_64_135	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07716	A9UU72_MONBE_136_208	92.6

Sequence based PCA Plot of the family - PF07716 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=43 Length=8
Motif2 Start=34 Length=8
Motif3 Start=6 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay