3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07715

Details:

PFam ID : PF07715

PFam Domain Description : TonB-dependent Receptor Plug Domain

Number of Sequence in 50% Dataset : 1172

Number of Sequence in Full Dataset : 12019

Average sequence length: 109.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07715	O85968_SPHAR_64_135	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07715	C9KV16_9BACE_135_198	99.1

Sequence based PCA Plot of the family - PF07715 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8
Motif3 Start=157 Length=8
Motif4 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay