3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07708

Details:

PFam ID : PF07708

PFam Domain Description : Tash protein PEST motif

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 51

Average sequence length: 18.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07708	E3T8Y8_9SAUR_1_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07708	Q4N9U1_THEPA_232_250	100

Sequence based PCA Plot of the family - PF07708 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay