3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07707

Details:

PFam ID : PF07707

PFam Domain Description : BTB And C-terminal Kelch

Number of Sequence in 50% Dataset : 439

Number of Sequence in Full Dataset : 1301

Average sequence length: 97.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07707	E3T8Y8_9SAUR_1_48	89.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07707	Q5BS16_SCHJA_2_60	100

Sequence based PCA Plot of the family - PF07707 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=8 Length=8
Motif4 Start=59 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay