3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07705

Details:

PFam ID : PF07705

PFam Domain Description : CARDB

Number of Sequence in 50% Dataset : 453

Number of Sequence in Full Dataset : 826

Average sequence length: 104.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07705	A7NMY3_ROSCS_578_716	77.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07705	C6A139_THESM_1558_1655	99.6

Sequence based PCA Plot of the family - PF07705 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay