3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07703

Details:

PFam ID : PF07703

PFam Domain Description : Alpha-2-macroglobulin family N-terminal region

Number of Sequence in 50% Dataset : 224

Number of Sequence in Full Dataset : 655

Average sequence length: 143.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07703	D5Q8L2_CLODI_89_139	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07703	E7I0E9_ECOLX_2_78	94.4

Sequence based PCA Plot of the family - PF07703 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay