3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07701

Details:

PFam ID : PF07701

PFam Domain Description : Heme NO binding associated

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 287

Average sequence length: 140.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07701	C3Y4Y8_BRAFL_275_348	84.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07701	A7RZH8_NEMVE_205_430	100

Sequence based PCA Plot of the family - PF07701 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=128 Length=8
Motif3 Start=213 Length=11
Motif4 Start=17 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay