3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07700

Details:

PFam ID : PF07700

PFam Domain Description : Heme NO binding

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 319

Average sequence length: 158.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07700	B7Z6G8_HUMAN_1_117	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07700	F2U5L4_9EUKA_1_178	100

Sequence based PCA Plot of the family - PF07700 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay