3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07699

Details:

PFam ID : PF07699

PFam Domain Description : GCC2 and GCC3

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 720

Average sequence length: 47.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07699	D2Z2U0_9BACT_261_446	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07699	A7AQ91_BABBO_994_1052	100

Sequence based PCA Plot of the family - PF07699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=28 Length=8
Motif3 Start=10 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay