3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07697

Details:

PFam ID : PF07697

PFam Domain Description : 7TM-HD extracellular

Number of Sequence in 50% Dataset : 208

Number of Sequence in Full Dataset : 333

Average sequence length: 216.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07697	A2TPV0_9FLAO_16_129	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07697	O83657_TREPA_245_359	98.7

Sequence based PCA Plot of the family - PF07697 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=11
Motif4 Start=238 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay