3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07696

Details:

PFam ID : PF07696

PFam Domain Description : 7TMR-DISM extracellular 2

Number of Sequence in 50% Dataset : 318

Number of Sequence in Full Dataset : 466

Average sequence length: 135.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07696	A2TPV0_9FLAO_16_129	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07696	D8JUR3_HYPDA_54_182	99.1

Sequence based PCA Plot of the family - PF07696 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay