3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07694

Details:

PFam ID : PF07694

PFam Domain Description : 5TMR of 5TMR-LYT

Number of Sequence in 50% Dataset : 183

Number of Sequence in Full Dataset : 517

Average sequence length: 166.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07694	B7FYL2_PHATC_208_422	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07694	O86286_LACLA_21_114	99.8

Sequence based PCA Plot of the family - PF07694 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay