3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07686

Details:

PFam ID : PF07686

PFam Domain Description : Immunoglobulin V-set domain

Number of Sequence in 50% Dataset : 849

Number of Sequence in Full Dataset : 5367

Average sequence length: 107.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07686	E2ANJ5_9HYME_248_392	99.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07686	Q6VZW4_CNPV_16_114	99.8

Sequence based PCA Plot of the family - PF07686 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=17
Motif2 Start=1 Length=8
Motif3 Start=131 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay