3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07685

Details:

PFam ID : PF07685

PFam Domain Description : CobB/CobQ-like glutamine amidotransferase domain

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 1880

Average sequence length: 156.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07685	A0MK40_9CRUS_1588_1647	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07685	B7K8I1_CYAP7_289_493	100

Sequence based PCA Plot of the family - PF07685 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=44 Length=8
Motif3 Start=97 Length=8
Motif4 Start=9 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay