3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07684

Details:

PFam ID : PF07684

PFam Domain Description : NOTCH protein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 67

Average sequence length: 60.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07684	A0MK40_9CRUS_1588_1647	38.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07684	E4XGY2_OIKDI_1613_1673	90.9

Sequence based PCA Plot of the family - PF07684 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay