3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07683

Details:

PFam ID : PF07683

PFam Domain Description : Cobalamin synthesis protein cobW C-terminal domain

Number of Sequence in 50% Dataset : 331

Number of Sequence in Full Dataset : 1684

Average sequence length: 98.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07683	A2YND5_ORYSI_267_324	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07683	E1MRH2_9GAMM_279_367	99.2

Sequence based PCA Plot of the family - PF07683 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=8
Motif3 Start=10 Length=8
Motif4 Start=111 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay