3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07681

Details:

PFam ID : PF07681

PFam Domain Description : DoxX

Number of Sequence in 50% Dataset : 289

Number of Sequence in Full Dataset : 2007

Average sequence length: 88.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07681	E6QEF5_9ZZZZ_235_359	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07681	Q0AN15_MARMM_33_147	96.7

Sequence based PCA Plot of the family - PF07681 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=30 Length=18
Motif3 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay