3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07679

Details:

PFam ID : PF07679

PFam Domain Description : Immunoglobulin I-set domain

Number of Sequence in 50% Dataset : 3289

Number of Sequence in Full Dataset : 12144

Average sequence length: 88.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07679	Q91T37_LSDV_121_180	99.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07679	F1NDI4_CHICK_6_70	99.9

Sequence based PCA Plot of the family - PF07679 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=57 Length=8
Motif4 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay