3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07678

Details:

PFam ID : PF07678

PFam Domain Description : A-macroglobulin complement component

Number of Sequence in 50% Dataset : 161

Number of Sequence in Full Dataset : 405

Average sequence length: 198.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07678	D6PVP2_EPICO_1_32	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07678	C4QL89_SCHMA_1280_1562	100

Sequence based PCA Plot of the family - PF07678 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=9 Length=17
Motif3 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay