3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07677

Details:

PFam ID : PF07677

PFam Domain Description : A-macroglobulin receptor

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 294

Average sequence length: 87.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07677	B4JBP0_DROGR_963_1050	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07677	C4QL89_SCHMA_1696_1798	100

Sequence based PCA Plot of the family - PF07677 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=20
Motif3 Start=69 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay