3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07676

Details:

PFam ID : PF07676

PFam Domain Description : WD40-like Beta Propeller Repeat

Number of Sequence in 50% Dataset : 759

Number of Sequence in Full Dataset : 5847

Average sequence length: 34.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07676	C9LK77_9BACT_1249_1437	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07676	B9S1D8_RICCO_447_511	81

Sequence based PCA Plot of the family - PF07676 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay