3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07657

Details:

PFam ID : PF07657

PFam Domain Description : N terminus of Notch ligand

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 95

Average sequence length: 74.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07657	Q1IQC9_ACIBL_107_123	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07657	B2L3W2_ASTMI_27_106	100

Sequence based PCA Plot of the family - PF07657 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=62 Length=14
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay