3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07654

Details:

PFam ID : PF07654

PFam Domain Description : Immunoglobulin C1-set domain

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 1474

Average sequence length: 78.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07654	Q4RZ20_TETNG_263_360	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07654	Q4RZ20_TETNG_263_360	100

Sequence based PCA Plot of the family - PF07654 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=20
Motif2 Start=1 Length=8
Motif3 Start=72 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay