3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07653

Details:

PFam ID : PF07653

PFam Domain Description : Variant SH3 domain

Number of Sequence in 50% Dataset : 258

Number of Sequence in Full Dataset : 1232

Average sequence length: 58.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07653	Q0GN74_9FLAV_1658_1721	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07653	Q6DFH8_XENLA_81_134	100

Sequence based PCA Plot of the family - PF07653 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=18
Motif3 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay