3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07652

Details:

PFam ID : PF07652

PFam Domain Description : Flavivirus glycoprotein, central and dimerisation domains

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 186

Average sequence length: 114.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07652	Q0GN74_9FLAV_1658_1721	53.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07652	Q09TQ0_9FLAV_27_172	100

Sequence based PCA Plot of the family - PF07652 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=8
Motif2 Start=129 Length=8
Motif3 Start=102 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay