3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07650

Details:

PFam ID : PF07650

PFam Domain Description : KH domain

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 2141

Average sequence length: 77.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07650	E9AX18_LEIME_451_481	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07650	D2EG01_9EURY_14_121	89

Sequence based PCA Plot of the family - PF07650 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8
Motif4 Start=33 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay