3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07645

Details:

PFam ID : PF07645

PFam Domain Description : Calcium-binding EGF domain

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 5503

Average sequence length: 41.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07645	C3ZTX1_BRAFL_236_289	53.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07645	Q4TFA3_TETNG_43_105	97.6

Sequence based PCA Plot of the family - PF07645 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay