3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07642

Details:

PFam ID : PF07642

PFam Domain Description : Outer membrane protein family (DUF1597)

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 196

Average sequence length: 340.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07642	Q6MQN6_BDEBA_25_347	81.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07642	B9TL01_RICCO_1_125	97.4

Sequence based PCA Plot of the family - PF07642 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=161 Length=8
Motif3 Start=5 Length=8
Motif4 Start=401 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay