3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07638

Details:

PFam ID : PF07638

PFam Domain Description : ECF sigma factor

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 169

Average sequence length: 167.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07638	D7Y586_ECOLX_4_72	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07638	F0SMW5_PLABD_10_203	100

Sequence based PCA Plot of the family - PF07638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=8
Motif3 Start=76 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay