3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07615

Details:

PFam ID : PF07615

PFam Domain Description : YKOF-related Family

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 99

Average sequence length: 77.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07615	Q21F68_SACD2_2_75	25.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07615	D7CSE8_TRURR_105_186	100

Sequence based PCA Plot of the family - PF07615 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=18 Length=8
Motif3 Start=9 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay