3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07593

Details:

PFam ID : PF07593

PFam Domain Description : ASPIC and UnbV

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 362

Average sequence length: 71.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07593	B5JCR5_9BACT_570_650	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07593	B5JCR5_9BACT_570_650	100

Sequence based PCA Plot of the family - PF07593 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=41 Length=8
Motif3 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay