3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07582

Details:

PFam ID : PF07582

PFam Domain Description : AP endonuclease family 2 C terminus

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 297

Average sequence length: 51.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07582	C0C593_9CLOT_268_310	54.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07582	Q9A7T9_CAUCR_281_335	100

Sequence based PCA Plot of the family - PF07582 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=13 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay