3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07580

Details:

PFam ID : PF07580

PFam Domain Description : M26 IgA1-specific Metallo-endopeptidase C-terminal region

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 73

Average sequence length: 638.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07580	D5S0D9_CLODI_1_172	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07580	C4FY82_9FIRM_1122_1882	100

Sequence based PCA Plot of the family - PF07580 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=366 Length=8
Motif2 Start=90 Length=8
Motif3 Start=260 Length=8
Motif4 Start=355 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay