3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07578

Details:

PFam ID : PF07578

PFam Domain Description : Lipid A Biosynthesis N-terminal domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 122

Average sequence length: 71.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07578	A3TST5_9RHOB_17_88	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07578	LPXB_CHLPN_13_84	100

Sequence based PCA Plot of the family - PF07578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=8 Length=20
Motif2 Start=63 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay