3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07576

Details:

PFam ID : PF07576

PFam Domain Description : BRCA1-associated protein 2

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 130

Average sequence length: 102.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07576	D7FPZ1_ECTSI_81_193	3.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07576	D7FPZ1_ECTSI_81_193	99.2

Sequence based PCA Plot of the family - PF07576 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=60 Length=8
Motif4 Start=91 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay