3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07575

Details:

PFam ID : PF07575

PFam Domain Description : Nup85 Nucleoporin

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 160

Average sequence length: 399.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07575	A5DZ64_LODEL_127_747	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07575	A9V554_MONBE_36_196	98.7

Sequence based PCA Plot of the family - PF07575 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=494 Length=19
Motif2 Start=10 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay