3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07574

Details:

PFam ID : PF07574

PFam Domain Description : Nse1 non-SMC component of SMC5-6 complex

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 140

Average sequence length: 161.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07574	B0WPT4_CULQU_7_174	61.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07574	F0X8L7_9PEZI_58_268	100

Sequence based PCA Plot of the family - PF07574 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=24 Length=8
Motif3 Start=83 Length=8
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay