3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07568

Details:

PFam ID : PF07568

PFam Domain Description : Histidine kinase

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 794

Average sequence length: 75.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07568	A6ERL0_9BACT_393_505	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07568	A6ERL0_9BACT_393_505	100

Sequence based PCA Plot of the family - PF07568 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=63 Length=8
Motif2 Start=3 Length=17
Motif3 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay